bionano

参考：

https://www.jianshu.com/nb/34576172

https://bionanogenomics.com/wp-content/uploads/2018/04/30205-Guidelines-for-Running-Bionano-Solve-Pipeline-on-Command-Line.pdf

https://bionanogenomics.com/wp-content/uploads/2018/04/30073-Bionano-Solve-Theory-of-Operation-Hybrid-Scaffold.pdf

#BSUB -J Solve
#BSUB -n 30
#BSUB -R span[hosts=1]
#BSUB -o %J.out
#BSUB -e %J.err
#BSUB -q normal

module load Solve/3.7_03302022_283

pipelineCL.py -T 30 -N 4 -f 1 -i 5  -b Abaca_bionano120k.bnx -r Abaca_genomic_CTTAAG_0kb_0labels.cmap -l Assembly -y -t ${SOLVE}/RefAligner/1.0/ -a optArguments_nonhaplotype_saphyr.xml  --species-reference Abaca_genomic_CTTAAG_0kb_0labels
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