fastlmmc

fastlmmc 使用 -maxThreads 选项设置多线程运行时,运行速度相比单线程运行速度要慢很多,建议不要使用该选项设置多线程,默认单线程运行即可。

# 6150 CPU @ 2.70GHz
$ time ./fastlmmc  -bfile all_chr_296_filter_snps -pheno res_1_5000.txt -bfileSim all_chr_296_filter_snps -pheno-name LOC_Os01g01330 -out LOC_Os01g01330_result.txt -maxThreads 20
real 4112.41
user 79598.59
sys  98.64
mem  32545440

# 6150 CPU @ 2.70GHz
$ time ./fastlmmc  -bfile all_chr_296_filter_snps -pheno res_1_5000.txt -bfileSim all_chr_296_filter_snps -pheno-name LOC_Os01g01330 -out LOC_Os01g01330_result.txt
real 2208.58
user 2166.45
sys  36.50
mem  32494552
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